Supplementary materials for:

Identification of markers associated with global changes in DNA methylation regulation in cancers

Peng Qiu, Li Zhang

Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center

 

Supplementary data:

(1) Methylation data used in this study: TCGAMethData.zip. (NOTE: The data dimension is 27k probes * 2491 samples, consisting of 340 normals, 2099 cancers and 52 cell line controls. One GBM sample TCGA-06-0145 is repeated 6 times. All other cancer samples correspond to unique patients.)

(2) Training and testing split: TCGAMethData_training_testing.zip (NOTE: 9k high variance probes * 2439 samples, the cell line controls are excluded).

(3) List of 200 top markers: List_of_data_top_200_probes.txt.

(4) A library of CCRs: CCRs.zip.

 

A manuscript of this work has been accepted by the 8th Annual Biotechnology and Bioinformatics Symposium (BIOT-2011)

If you have any questions, please email: lzhangli@mdanderson.org.