Peng Qiu, Li Zhang
Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center
(1) Methylation data used in this study: TCGAMethData.zip. (NOTE: The data dimension is 27k probes * 2491 samples, consisting of 340 normals, 2099 cancers and 52 cell line controls. One GBM sample TCGA-06-0145 is repeated 6 times. All other cancer samples correspond to unique patients.)
(2) Training and testing split: TCGAMethData_training_testing.zip (NOTE: 9k high variance probes * 2439 samples, the cell line controls are excluded).
(3) List of 200 top markers: List_of_data_top_200_probes.txt.
(4) A library of CCRs: CCRs.zip.
A manuscript of this work has been accepted by the 8th Annual Biotechnology and Bioinformatics Symposium (BIOT-2011)
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