Statistical Modeling Workshop
for
Genetics of Addiction


Related Links


Computing Resources(in preparation)


Purpose

- to discuss statistical genetic methods that are applicable for addictive behaviors
- to explore the areas of GWAS, Next Generation Sequence, and beyond
- to provide learning opportunity among participants through Q&A and presentation as well

Workshop Course Coordinator

- Dr. Sanjay Shete, Professor of Biostatistics and Epidemiology
- Contact:
  • Phone: (713) 745-2483
  • Email: sshete@mdanderson.org
  • Office: FCT4.6002, Pickens Academic Tower, 1400 Pressler Dr, Houston, TX 77230

Current Schedule

- every Friday noon, from 12 - 1 pm
- at FCT4.6057 (west end conf rm)(the location for 2014, since Sept 2014)
- at FCT4.5043 (east end conf rm)(the location for 2013, since March 2013)
- at FCT4.6057 (west end conf rm)/ FCT4.5071 (dept library at east side) (loc for 2013)
- at the Conference room, FCT4.5043 (the location for 2012 series)


2014 Series

Topics

Title Presenter(s) Date Materials
Survey Regression (1 of 2) Rajesh Talluri 9/12/2014 Fri
@ FCT4.6057
Survey Regression
Survey Regression (2 of 2) Rajesh Talluri 9/19/2014 Fri
@ FCT4.6057
Survey Regression
Cancelled . 9/26/2014 Fri
@ FCT4.6057
n/a


2013 Series

Topics

Title Presenter(s) Date Materials
AGES series (1)
Multivariate Genetics Factor Analysis
Shabnam Azadeh 2/12/2013 Tues
@ FCT4.6057
Advanced Genetic
Epidemiology
Statistical Workshop
AGES series (2)
Multivariate Genetics Factor Analysis
Shabnam Azadeh 2/19/2013 Tues
@ FCT4.5071
Advanced Genetic
Epidemiology
Statistical Workshop
AGES series (3)
Multivariate Genetics Factor Analysis
Shabnam Azadeh 2/26/2013 Tues
@ FCT4.6057
Advanced Genetic
Epidemiology
Statistical Workshop
AGES series (4)
Multivariate Genetics Factor Analysis
Shabnam Azadeh 3/5/2013 Tues
@ FCT4.5043
Advanced Genetic
Epidemiology
Statistical Workshop
Spring Break n/a 3/12/2013 Tues n/a
AGES series (5)
Multivariate Genetics Factor Analysis
Shijing Liu 3/19/2013 Tues
@ FCT4.5043
Advanced Genetic
Epidemiology
Statistical Workshop


supporting materials
Dr. Neale's slides Dr. Neale's paper
GWAS (1) Dr. Shete 3/26/2013 Tues GWAS
GWAS (2) Dr. Shete 4/2/2013 Tues GWAS
Cancelled Dr. Shete 4/10/2013 Tues na
GWAS (3) Dr. Shete 4/19/2013 Fri
@ FCT4.6057
GWAS
GWAS: population stratification using IBS (1) Robert Yu 4/26/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
GWAS: population stratification using IBS (2) Robert Yu 5/3/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
GWAS: population stratification using IBS (3) Robert Yu 5/10/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
GWAS: population stratification using IBS (4) Robert Yu 5/17/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
WC Lee's communication paper
Nature Genetics Review paper
GWAS: population stratification using IBS (5) Robert Yu 5/24/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
GWAS: population stratification using IBS (6) Robert Yu 5/31/2013 Fri
12 pm @FCT4.6057
population stratification using IBS
GWAS: population stratification using IBS (6) Robert Yu 5/31/2013 Fri
12 pm @FCT4.6057
population stratification using IBS
Intro of Genome-wide Complex Trait Analysis (1) Yue-Ming Chen 6/7/2013 Fri
12 pm @FCT4.6057
Genome-wide Complex Trait Analysis
Intro of Genome-wide Complex Trait Analysis (2) Yue-Ming Chen 6/14/2013 Fri
12 pm @FCT4.6057
Genome-wide Complex Trait Analysis
Summer Break na 6/17/2013 Fri - 8/6/2013 Tue na
Understanding Next Generation Sequencing (1) Robert Yu 9/3/2013 Tues
4 pm @FCT4.5043
Understanding NGS Technology
Understanding Next Generation Sequencing (2) Robert Yu 9/9/2013 Tues
12 pm @FCT4.5043
Understanding NGS Technology
Cancelled n/a 9/16/2013 Tues
12 pm @FCT4.5043
n/a
Understanding Next Generation Sequencing (3) Robert Yu 9/26/2013 Thurs
12 pm @FCT4.5043
Understanding NGS Technology
Variant Tools and Sequencing Data Analysis (1) Dr. Bo Peng 10/3/2013 Thurs
12 pm @FCT4.5043
Variant Tools
Variant Tools and Sequencing Data Analysis (2) Dr. Bo Peng 10/10/2013 Thurs
12 pm @FCT4.5043
Variant Tools
Statistical Analysis of Sequencing Data (1) Dr. Sanjay Shete 10/17/2013 Thurs
12 pm @FCT4.5043
Disease-associated Rare Variants
Statistical Analysis of Sequencing Data (2) Dr. Sanjay Shete 10/24/2013 Thurs
12 pm @FCT4.5043
Disease-associated Rare Variants
Introduction to Statistical Methods in Meta-Analysis Dr. Jian Wang 10/31/2013 Thurs
12 pm @FCT4.5043
Meta Analysis
SMART Design (1) Dr. Sanjay Shete 11/7/2013 Thurs
12 pm @FCT4.5043
SMART Design
SMART Design (2) Dr. Sanjay Shete 11/14/2013 Thurs
12 pm @FCT4.5043
SMART Design
Smart Design: Q-learning Tianjiao Dai 11/21/2013 Thurs
12 pm @FCT4.5043
Q-learning
An Overview of Multiphase Optimization Strategy
for Behavioral Intervention Development
Dr. Liang Li 12/5/2013 Thurs
12 pm @FCT4.5043
MOST Overview
2013 Winter Break Until Mid Jan 2014 Happy Holidays . See You Next Year



2012 Series

Topics

Title Presenter(s) Date Materials
Epigenetics: Methylation Rajesh Talluri 2/3/2012 Fri (TBP)
Epigenetics: Methylation Rajesh Talluri 2/17/2012 Fri (TBP)
Epigenetics: Methylation Rajesh Talluri 2/24/2012 Fri (TBP)
Epigenetics: Methylation Rajesh Talluri 3/9/2012 Fri (TBP)
Epigenetics: Methylation Rajesh Talluri ??? (TBP)
Analysis of Genetic Data on Human Chromosome X Robert Yu 6/12/2012 Tues slides (PDF)
Analysis of Genetic Data on Human Chromosome X Robert Yu 6/19/2012 Tues slides (PDF)
Discussion on Pearson's χ2 test and Cochran-Armitage trend test applied to GWAS SNP-based data Shabnam Azadeh
Rajesh Talluri
6/26/2012 Tues n/a
Statistical Tests for X Chromosome Association Study Jian Wang 6/26/2012 Tues slides (PDF)
Meeting Cancelled
for
Observing July 4 Holiday
n/a 7/3/2012 Tues n/a
Statistical Tests for X Chromosome Association Study Jian Wang 7/10/2012 Tues slides (PDF)
Epidemiology of Cancer-Related Symptoms Dr. Cielito Reyes-Gibby 7/17/2012 Tues slides (PDF)
n/a cancelled 7/24/2012 n/a
Meeting Cancelled
due to ASA meetings
cancelled 7/31/2012 n/a
Introduction to Multilevel Modeling (1) Robert Yu 8/7/2012 Tues slides (PDF)
Introduction to Multilevel Modeling (2) Robert Yu 8/14/2012 Tues slides (PDF)
Introduction to Multilevel Modeling (3) Robert Yu 8/28/2012 Tues slides (PDF)
Introduction to Multilevel Modeling (part 2) (4)
Application of MLM to GAW18 data (part 1)
Jian Wang 9/4/2012 Tues slides on GAW18
Introduction to Multilevel Modeling (part 2) (5)
Application of MLM to GAW18 data (part 2)
Jian Wang 9/11/2012 Tues slides on GAW18
Introduction to Multilevel Modeling (part 2) (6)
Application of MLM to GAW18 data (part 3)
Jian Wang 9/18/2012 Tues slides on GAW18
Introduction to Multilevel Modeling (part 2) (end) Jian Wang 9/25/2012 Tues slides on MLM
(cancelled) n/a 10/2/2012 Tues slides on MLM
Testing Nonnested Models Lerong Li 10/9/2012 Tues
Meeting Cancelled
due to GAW18/IGES meetings
cancelled 10/16/2012 Tues n/a
Meeting Cancelled
due to GAW18/IGES meetings
n/a 10/23/2012 Tues n/a
Hardy-Weinberg Principle (1) Dr. Sanjay Shete 10/30/2012 Tues PDF file of lecture note
Meeting Cancelled
due to Dr.Shete's trip
cancelled 11/6/2012 Tues n/a/
Hardy-Weinberg Principle (2) Dr. Sanjay Shete 11/13/2012 Tues HWP calc
HWP in GWAS
HWP in case/ctrl data
Hardy-Weinberg Principle (3) Dr. Sanjay Shete 11/20/2012 Tues HWP in GWAS
HWP in case/ctrl data
Hardy-Weinberg Principle (4) Dr. Sanjay Shete 11/27/2012 Tues HWP in GWAS
HWP in case/ctrl data
2012 Winter Break Until Mid Jan 2013 Happy Holidays . See You Next Year
Contact for web content questions: Robert Yu via rkyu@mdanderson.org