Statistical Modeling Workshop
for
Genetics of Addiction


Related Links


Computing Resources(in preparation)


Purpose

- to discuss statistical genetic methods that are applicable for addictive behaviors
- to explore the areas of GWAS, Next Generation Sequence, and beyond
- to provide learning opportunity among participants through Q&A and presentation as well

Workshop Course Coordinator

- Dr. Sanjay Shete, Professor of Biostatistics and Epidemiology
- Contact:
  • Phone: (713) 745-2483
  • Email: sshete@mdanderson.org
  • Office: FCT4.6002, Pickens Academic Tower, 1400 Pressler Dr, Houston, TX 77230

Current Schedule

- every Friday noon, from 12 - 1 pm
- at FCT4.6057 (west end conf rm)(the location for 2014, since Sept 2014)
- at FCT4.5043 (east end conf rm)(the location for 2013, since March 2013)
- at FCT4.6057 (west end conf rm)/ FCT4.5071 (dept library at east side) (loc for 2013)
- at the Conference room, FCT4.5043 (the location for 2012 series)

Behavioral Science Biostatistics Workshop (October 13, 2014)


2014 Series

Topics




Title Presenter(s) Date Materials
Survey Regression (1 of 2) Rajesh Talluri 9/12/2014 Fri
@ FCT4.6057
Survey Regression
Survey Regression (2 of 2) Rajesh Talluri 9/19/2014 Fri
@ FCT4.6057
Survey Regression
Cancelled . 9/26/2014 Fri
@ FCT4.6057
n/a
Understanding Human Chromosome Y (1) Robert Yu 10/3/2014 Fri
@ FCT4.6057
Understanding Human
Chromosome Y
Understanding Human Chromosome Y (2) Robert Yu 10/10/2014 Fri
@ FCT4.6057
Understanding Human
Chromosome Y
Understanding Human Chromosome Y (3)
  • paper: Bellott's paper (2014)
  • paper: Cortez's paper (2014)
  • Robert Yu 10/17/2014 Fri
    @ FCT4.6057
    Understanding Human
    Chromosome Y
    cancelled n/a 10/24/2014 Fri
    @ FCT4.6057
    n/a
    Mediation: Background, Motivation, and Methodology (1) Israel Christie 10/31/2014 Fri
    @ FCT4.6057
    Mediation
    Mediation: Background, Motivation, and Methodology (2) Israel Christie 11/7/2014 Fri
    @ FCT4.6057
    Mediation
    Mediation: Background, Motivation, and Methodology (3) Israel Christie 11/14/2014 Fri
    @ FCT4.6057
    Mediation
    cancelled . 11/21/2014 Fri
    @ FCT4.6057
    na
    Holiday Break . 11/28/2014 Fri
    @ FCT4.6057
    na
    Bias-corrected CI Estimation Using Bootstrapping Dr. Sanjay Shete 12/5/2014 Fri
    @ FCT4.6057
    tbp


    2013 Series

    Topics




    Title Presenter(s) Date Materials
    AGES series (1)
    Multivariate Genetics Factor Analysis
    Shabnam Azadeh 2/12/2013 Tues
    @ FCT4.6057
    Advanced Genetic
    Epidemiology
    Statistical Workshop
    AGES series (2)
    Multivariate Genetics Factor Analysis
    Shabnam Azadeh 2/19/2013 Tues
    @ FCT4.5071
    Advanced Genetic
    Epidemiology
    Statistical Workshop
    AGES series (3)
    Multivariate Genetics Factor Analysis
    Shabnam Azadeh 2/26/2013 Tues
    @ FCT4.6057
    Advanced Genetic
    Epidemiology
    Statistical Workshop
    AGES series (4)
    Multivariate Genetics Factor Analysis
    Shabnam Azadeh 3/5/2013 Tues
    @ FCT4.5043
    Advanced Genetic
    Epidemiology
    Statistical Workshop
    Spring Break n/a 3/12/2013 Tues n/a
    AGES series (5)
    Multivariate Genetics Factor Analysis
    Shijing Liu 3/19/2013 Tues
    @ FCT4.5043
    Advanced Genetic
    Epidemiology
    Statistical Workshop


    supporting materials
    Dr. Neale's slides Dr. Neale's paper
    GWAS (1) Dr. Shete 3/26/2013 Tues GWAS
    GWAS (2) Dr. Shete 4/2/2013 Tues GWAS
    Cancelled Dr. Shete 4/10/2013 Tues na
    GWAS (3) Dr. Shete 4/19/2013 Fri
    @ FCT4.6057
    GWAS
    GWAS: population stratification using IBS (1) Robert Yu 4/26/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (2) Robert Yu 5/3/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (3) Robert Yu 5/10/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (4) Robert Yu 5/17/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    WC Lee's communication paper
    Nature Genetics Review paper
    GWAS: population stratification using IBS (5) Robert Yu 5/24/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (6) Robert Yu 5/31/2013 Fri
    12 pm @FCT4.6057
    population stratification using IBS
    GWAS: population stratification using IBS (6) Robert Yu 5/31/2013 Fri
    12 pm @FCT4.6057
    population stratification using IBS
    Intro of Genome-wide Complex Trait Analysis (1) Yue-Ming Chen 6/7/2013 Fri
    12 pm @FCT4.6057
    Genome-wide Complex Trait Analysis
    Intro of Genome-wide Complex Trait Analysis (2) Yue-Ming Chen 6/14/2013 Fri
    12 pm @FCT4.6057
    Genome-wide Complex Trait Analysis
    Summer Break na 6/17/2013 Fri - 8/6/2013 Tue na
    Understanding Next Generation Sequencing (1) Robert Yu 9/3/2013 Tues
    4 pm @FCT4.5043
    Understanding NGS Technology
    Understanding Next Generation Sequencing (2) Robert Yu 9/9/2013 Tues
    12 pm @FCT4.5043
    Understanding NGS Technology
    Cancelled n/a 9/16/2013 Tues
    12 pm @FCT4.5043
    n/a
    Understanding Next Generation Sequencing (3) Robert Yu 9/26/2013 Thurs
    12 pm @FCT4.5043
    Understanding NGS Technology
    Variant Tools and Sequencing Data Analysis (1) Dr. Bo Peng 10/3/2013 Thurs
    12 pm @FCT4.5043
    Variant Tools
    Variant Tools and Sequencing Data Analysis (2) Dr. Bo Peng 10/10/2013 Thurs
    12 pm @FCT4.5043
    Variant Tools
    Statistical Analysis of Sequencing Data (1) Dr. Sanjay Shete 10/17/2013 Thurs
    12 pm @FCT4.5043
    Disease-associated Rare Variants
    Statistical Analysis of Sequencing Data (2) Dr. Sanjay Shete 10/24/2013 Thurs
    12 pm @FCT4.5043
    Disease-associated Rare Variants
    Introduction to Statistical Methods in Meta-Analysis Dr. Jian Wang 10/31/2013 Thurs
    12 pm @FCT4.5043
    Meta Analysis
    SMART Design (1) Dr. Sanjay Shete 11/7/2013 Thurs
    12 pm @FCT4.5043
    SMART Design
    SMART Design (2) Dr. Sanjay Shete 11/14/2013 Thurs
    12 pm @FCT4.5043
    SMART Design
    Smart Design: Q-learning Tianjiao Dai 11/21/2013 Thurs
    12 pm @FCT4.5043
    Q-learning
    An Overview of Multiphase Optimization Strategy
    for Behavioral Intervention Development
    Dr. Liang Li 12/5/2013 Thurs
    12 pm @FCT4.5043
    MOST Overview
    2013 Winter Break Until Mid Jan 2014 Happy Holidays . See You Next Year



    2012 Series

    Topics

    Title Presenter(s) Date Materials
    Epigenetics: Methylation Rajesh Talluri 2/3/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri 2/17/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri 2/24/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri 3/9/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri ??? (TBP)
    Analysis of Genetic Data on Human Chromosome X Robert Yu 6/12/2012 Tues slides (PDF)
    Analysis of Genetic Data on Human Chromosome X Robert Yu 6/19/2012 Tues slides (PDF)
    Discussion on Pearson's χ2 test and Cochran-Armitage trend test applied to GWAS SNP-based data Shabnam Azadeh
    Rajesh Talluri
    6/26/2012 Tues n/a
    Statistical Tests for X Chromosome Association Study Jian Wang 6/26/2012 Tues slides (PDF)
    Meeting Cancelled
    for
    Observing July 4 Holiday
    n/a 7/3/2012 Tues n/a
    Statistical Tests for X Chromosome Association Study Jian Wang 7/10/2012 Tues slides (PDF)
    Epidemiology of Cancer-Related Symptoms Dr. Cielito Reyes-Gibby 7/17/2012 Tues slides (PDF)
    n/a cancelled 7/24/2012 n/a
    Meeting Cancelled
    due to ASA meetings
    cancelled 7/31/2012 n/a
    Introduction to Multilevel Modeling (1) Robert Yu 8/7/2012 Tues slides (PDF)
    Introduction to Multilevel Modeling (2) Robert Yu 8/14/2012 Tues slides (PDF)
    Introduction to Multilevel Modeling (3) Robert Yu 8/28/2012 Tues slides (PDF)
    Introduction to Multilevel Modeling (part 2) (4)
    Application of MLM to GAW18 data (part 1)
    Jian Wang 9/4/2012 Tues slides on GAW18
    Introduction to Multilevel Modeling (part 2) (5)
    Application of MLM to GAW18 data (part 2)
    Jian Wang 9/11/2012 Tues slides on GAW18
    Introduction to Multilevel Modeling (part 2) (6)
    Application of MLM to GAW18 data (part 3)
    Jian Wang 9/18/2012 Tues slides on GAW18
    Introduction to Multilevel Modeling (part 2) (end) Jian Wang 9/25/2012 Tues slides on MLM
    (cancelled) n/a 10/2/2012 Tues slides on MLM
    Testing Nonnested Models Lerong Li 10/9/2012 Tues
    Meeting Cancelled
    due to GAW18/IGES meetings
    cancelled 10/16/2012 Tues n/a
    Meeting Cancelled
    due to GAW18/IGES meetings
    n/a 10/23/2012 Tues n/a
    Hardy-Weinberg Principle (1) Dr. Sanjay Shete 10/30/2012 Tues PDF file of lecture note
    Meeting Cancelled
    due to Dr.Shete's trip
    cancelled 11/6/2012 Tues n/a/
    Hardy-Weinberg Principle (2) Dr. Sanjay Shete 11/13/2012 Tues HWP calc
    HWP in GWAS
    HWP in case/ctrl data
    Hardy-Weinberg Principle (3) Dr. Sanjay Shete 11/20/2012 Tues HWP in GWAS
    HWP in case/ctrl data
    Hardy-Weinberg Principle (4) Dr. Sanjay Shete 11/27/2012 Tues HWP in GWAS
    HWP in case/ctrl data
    2012 Winter Break Until Mid Jan 2013 Happy Holidays . See You Next Year
    Contact for web content questions: Robert Yu via rkyu@mdanderson.org