Statistical Modeling Workshop
for
Genetics of Addiction

Related Links


Computing Resources(in preparation)

Purpose

- to discuss statistical genetic methods that are applicable for addictive behaviors
- to explore the areas of GWAS, Next Generation Sequence, and beyond
- to provide learning opportunity among participants through Q&A and presentation as well

Workshop Course Coordinator

- Dr. Sanjay Shete, Professor of Biostatistics and Epidemiology
- Contact:
  • Phone: (713) 745-2483
  • Email: sshete@mdanderson.org
  • Office: FCT4.6002, Pickens Academic Tower, 1400 Pressler Dr, Houston, TX 77230

Current Schedule

- every Thursday noon, from 12 - 1 pm
- at FCT5.5049 (east end conf rm)(the location for 2015, since Feb 2015) Please notice it's on 5th floor.
- at FCT4.6057 (west end conf rm)(the location for 2014, since Sept 2014)
- at FCT4.5043 (east end conf rm)(the location for 2013, since March 2013)
- at FCT4.6057 (west end conf rm)/ FCT4.5071 (dept library at east side) (loc for 2013)
- at the Conference room, FCT4.5043 (the location for 2012 series)

2015 Series

Topics


Click to see the enlarged board writing.

Title Presenter(s) Date Materials
Introduction to Propensity Score Analysis (1) Dr. Liang Li 2/26/2015 Thurs
@ FCT5.5049		 Propensity Score Analysis
Introduction to Propensity Score Analysis (2) Dr. Liang Li 3/5/2015 Thurs
@ FCT5.5049		 Propensity Score Analysis
Introduction to Propensity Score Analysis (3) Dr. Liang Li 3/12/2015 Thurs
@ FCT5.5049		 Propensity Score Analysis
cancelled . 3/19/2015 Thurs
@ FCT5.5049		 .
Introduction to Propensity Score Analysis (4) Dr. Liang Li 3/26/2015 Thurs
@ FCT5.5049		 Propensity Score Analysis
NGS data analyses (1) Robert Yu 4/2/2015 Thurs
@ FCT5.5049		 NGS Data Analyses - rare variants
Ref slides (1)
NGS data analyses (2) Robert Yu 4/9/2015 Thurs
@ FCT5.5049		 NGS Data Analyses - rare variants
Ref slides (1)
NGS data analyses (3) Robert Yu 4/16/2015 Thurs
@ FCT5.5049		 NGS Data Analyses - rare variants
supporting slides
cancelled due to Dr.Shete's schedule conflict Robert Yu 4/23/2015 Thurs
@ FCT5.5049		 .
NGS data analyses (4) Robert Yu 4/30/2015 Thurs
@ FCT5.5049		 NGS Data Analyses - rare variants
NGS data analyses (5) Robert Yu 5/7/2015 Thurs
@ FCT5.5049		 NGS Data Analyses - rare variants
NGS data analyses (6) Robert Yu 5/14/2015 Thurs
@ FCT5.5049		 NGS Data Analyses - rare variants
Summer Break . until late August 2015 .

Behavioral Science Biostatistics Workshop (October 13, 2014)

2014 Series

Topics




Title Presenter(s) Date Materials
Survey Regression (1 of 2) Rajesh Talluri 9/12/2014 Fri
@ FCT4.6057		 Survey Regression
Survey Regression (2 of 2) Rajesh Talluri 9/19/2014 Fri
@ FCT4.6057		 Survey Regression
Cancelled . 9/26/2014 Fri
@ FCT4.6057		 n/a
Understanding Human Chromosome Y (1) Robert Yu 10/3/2014 Fri
@ FCT4.6057		 Understanding Human
Chromosome Y
Understanding Human Chromosome Y (2) Robert Yu 10/10/2014 Fri
@ FCT4.6057		 Understanding Human
Chromosome Y
Understanding Human Chromosome Y (3)
  • paper: Bellott's paper (2014)
  • paper: Cortez's paper (2014)
    		•  Robert Yu 10/17/2014 Fri
    @ FCT4.6057    		 Understanding Human
    Chromosome Y
    cancelled n/a 10/24/2014 Fri
    @ FCT4.6057    		 n/a
    Mediation: Background, Motivation, and Methodology (1) Israel Christie 10/31/2014 Fri
    @ FCT4.6057    		 Mediation
    Mediation: Background, Motivation, and Methodology (2) Israel Christie 11/7/2014 Fri
    @ FCT4.6057    		 Mediation
    Mediation: Background, Motivation, and Methodology (3) Israel Christie 11/14/2014 Fri
    @ FCT4.6057    		 Mediation
    cancelled . 11/21/2014 Fri
    @ FCT4.6057    		 na
    Holiday Break . 11/28/2014 Fri
    @ FCT4.6057    		 na
    Bias-corrected CI Estimation Using Bootstrapping (1) Dr. Sanjay Shete 12/5/2014 Fri
    @ FCT4.6057    		 Talk Notes
    Bias-corrected CI Estimation Using Bootstrapping (2) Dr. Sanjay Shete 12/12/2014 Fri
    @ FCT4.6057    		 Talk Notes
    Winter Break n/a until Jan 2015 Happy Holidays

    2013 Series

    Topics




    Title Presenter(s) Date Materials
    AGES series (1)
    Multivariate Genetics Factor Analysis    		 Shabnam Azadeh 2/12/2013 Tues
    @ FCT4.6057    		 Advanced Genetic
    Epidemiology
    Statistical Workshop
    AGES series (2)
    Multivariate Genetics Factor Analysis    		 Shabnam Azadeh 2/19/2013 Tues
    @ FCT4.5071    		 Advanced Genetic
    Epidemiology
    Statistical Workshop
    AGES series (3)
    Multivariate Genetics Factor Analysis    		 Shabnam Azadeh 2/26/2013 Tues
    @ FCT4.6057    		 Advanced Genetic
    Epidemiology
    Statistical Workshop
    AGES series (4)
    Multivariate Genetics Factor Analysis    		 Shabnam Azadeh 3/5/2013 Tues
    @ FCT4.5043    		 Advanced Genetic
    Epidemiology
    Statistical Workshop
    Spring Break n/a 3/12/2013 Tues n/a
    AGES series (5)
    Multivariate Genetics Factor Analysis    		 Shijing Liu 3/19/2013 Tues
    @ FCT4.5043    		 Advanced Genetic
    Epidemiology
    Statistical Workshop

    supporting materials
    Dr. Neale's slides Dr. Neale's paper
    GWAS (1) Dr. Shete 3/26/2013 Tues GWAS
    GWAS (2) Dr. Shete 4/2/2013 Tues GWAS
    Cancelled Dr. Shete 4/10/2013 Tues na
    GWAS (3) Dr. Shete 4/19/2013 Fri
    @ FCT4.6057    		 GWAS
    GWAS: population stratification using IBS (1) Robert Yu 4/26/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (2) Robert Yu 5/3/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (3) Robert Yu 5/10/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (4) Robert Yu 5/17/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    WC Lee's communication paper
    Nature Genetics Review paper
    GWAS: population stratification using IBS (5) Robert Yu 5/24/2013 Fri 12 pm @FCT4.6057 population stratification using IBS
    GWAS: population stratification using IBS (6) Robert Yu 5/31/2013 Fri
    12 pm @FCT4.6057    		 population stratification using IBS
    GWAS: population stratification using IBS (7) Robert Yu 5/31/2013 Fri
    12 pm @FCT4.6057    		 population stratification using IBS
    Intro of Genome-wide Complex Trait Analysis (1) Yue-Ming Chen 6/7/2013 Fri
    12 pm @FCT4.6057    		 Genome-wide Complex Trait Analysis
    Intro of Genome-wide Complex Trait Analysis (2) Yue-Ming Chen 6/14/2013 Fri
    12 pm @FCT4.6057    		 Genome-wide Complex Trait Analysis
    Summer Break na 6/17/2013 Fri - 8/6/2013 Tue na
    Understanding Next Generation Sequencing (1) Robert Yu 9/3/2013 Tues
    4 pm @FCT4.5043    		 Understanding NGS Technology
    Understanding Next Generation Sequencing (2) Robert Yu 9/9/2013 Tues
    12 pm @FCT4.5043    		 Understanding NGS Technology
    Cancelled n/a 9/16/2013 Tues
    12 pm @FCT4.5043    		 n/a
    Understanding Next Generation Sequencing (3) Robert Yu 9/26/2013 Thurs
    12 pm @FCT4.5043    		 Understanding NGS Technology
    Variant Tools and Sequencing Data Analysis (1) Dr. Bo Peng 10/3/2013 Thurs
    12 pm @FCT4.5043    		 Variant Tools
    Variant Tools and Sequencing Data Analysis (2) Dr. Bo Peng 10/10/2013 Thurs
    12 pm @FCT4.5043    		 Variant Tools
    Statistical Analysis of Sequencing Data (1) Dr. Sanjay Shete 10/17/2013 Thurs
    12 pm @FCT4.5043    		 Disease-associated Rare Variants
    Statistical Analysis of Sequencing Data (2) Dr. Sanjay Shete 10/24/2013 Thurs
    12 pm @FCT4.5043    		 Disease-associated Rare Variants
    Introduction to Statistical Methods in Meta-Analysis Dr. Jian Wang 10/31/2013 Thurs
    12 pm @FCT4.5043    		 Meta Analysis
    SMART Design (1) Dr. Sanjay Shete 11/7/2013 Thurs
    12 pm @FCT4.5043    		 SMART Design
    SMART Design (2) Dr. Sanjay Shete 11/14/2013 Thurs
    12 pm @FCT4.5043    		 SMART Design
    Smart Design: Q-learning Tianjiao Dai 11/21/2013 Thurs
    12 pm @FCT4.5043    		 Q-learning
    An Overview of Multiphase Optimization Strategy
    for Behavioral Intervention Development    		 Dr. Liang Li 12/5/2013 Thurs
    12 pm @FCT4.5043    		 MOST Overview
    2013 Winter Break Until Mid Jan 2014 Happy Holidays . See You Next Year


    2012 Series

    Topics

    Title Presenter(s) Date Materials
    Epigenetics: Methylation Rajesh Talluri 2/3/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri 2/17/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri 2/24/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri 3/9/2012 Fri (TBP)
    Epigenetics: Methylation Rajesh Talluri ??? (TBP)
    Analysis of Genetic Data on Human Chromosome X Robert Yu 6/12/2012 Tues slides (PDF)
    Analysis of Genetic Data on Human Chromosome X Robert Yu 6/19/2012 Tues slides (PDF)
    Discussion on Pearson's χ2 test and Cochran-Armitage trend test applied to GWAS SNP-based data Shabnam Azadeh
    Rajesh Talluri    		 6/26/2012 Tues n/a
    Statistical Tests for X Chromosome Association Study Jian Wang 6/26/2012 Tues slides (PDF)
    Meeting Cancelled
    for
    Observing July 4 Holiday    		 n/a 7/3/2012 Tues n/a
    Statistical Tests for X Chromosome Association Study Jian Wang 7/10/2012 Tues slides (PDF)
    Epidemiology of Cancer-Related Symptoms Dr. Cielito Reyes-Gibby 7/17/2012 Tues slides (PDF)
    n/a cancelled 7/24/2012 n/a
    Meeting Cancelled
    due to ASA meetings    		 cancelled 7/31/2012 n/a
    Introduction to Multilevel Modeling (1) Robert Yu 8/7/2012 Tues slides (PDF)
    Introduction to Multilevel Modeling (2) Robert Yu 8/14/2012 Tues slides (PDF)
    Introduction to Multilevel Modeling (3) Robert Yu 8/28/2012 Tues slides (PDF)
    Introduction to Multilevel Modeling (part 2) (4)
    Application of MLM to GAW18 data (part 1)    		 Jian Wang 9/4/2012 Tues slides on GAW18
    Introduction to Multilevel Modeling (part 2) (5)
    Application of MLM to GAW18 data (part 2)    		 Jian Wang 9/11/2012 Tues slides on GAW18
    Introduction to Multilevel Modeling (part 2) (6)
    Application of MLM to GAW18 data (part 3)    		 Jian Wang 9/18/2012 Tues slides on GAW18
    Introduction to Multilevel Modeling (part 2) (end) Jian Wang 9/25/2012 Tues slides on MLM
    (cancelled) n/a 10/2/2012 Tues slides on MLM
    Testing Nonnested Models Lerong Li 10/9/2012 Tues
    Meeting Cancelled
    due to GAW18/IGES meetings    		 cancelled 10/16/2012 Tues n/a
    Meeting Cancelled
    due to GAW18/IGES meetings    		 n/a 10/23/2012 Tues n/a
    Hardy-Weinberg Principle (1) Dr. Sanjay Shete 10/30/2012 Tues PDF file of lecture note
    Meeting Cancelled
    due to Dr.Shete's trip    		 cancelled 11/6/2012 Tues n/a/
    Hardy-Weinberg Principle (2) Dr. Sanjay Shete 11/13/2012 Tues HWP calc
    HWP in GWAS
    HWP in case/ctrl data
    Hardy-Weinberg Principle (3) Dr. Sanjay Shete 11/20/2012 Tues HWP in GWAS
    HWP in case/ctrl data
    Hardy-Weinberg Principle (4) Dr. Sanjay Shete 11/27/2012 Tues HWP in GWAS
    HWP in case/ctrl data
    2012 Winter Break Until Mid Jan 2013 Happy Holidays . See You Next Year
    Contact for web content questions: Robert Yu via rkyu@mdanderson.org