Help info for using PerfectMatch program:
New! The parameter files had
been updated to the latest version from Affymetrix , please download and using
the new files for perfectmatch program.
Download the new update for PerfectMatch package (updated on 04-04-2005; v2.3.3). Then unzip the files and run the setup program. You will also need a set of sequence and parameter files to run the program. Please choose the array type and download the files. After download these files, you need to unzip them and use it in the PerfectMatch program.
Human Genome U133A Human
Genome U133A2.0 Human Genome U133 Plus 2.0
Human Genome U95Av2 Murine Genome
U74Av2 Mouse Genome 430 2.0 Mouse Genome 430A 2.0
Download : the PerfectMatch Program Manual in PDF format.
Download the PDNN paper: Note
that the PDF file on this website is slightly different from the one published
on Nature Biotechnology journal that contained a few mistakes in the figure
legends.
Download Probe Binding Energy Calculator here. This program can compute probe binding energy for any given probe sequences using PDNN parameters. This program is created for evaluating probe performance to assist probe design.
Contact: If you have any question concerning PerfectMatch Program, please email lzhangli@mdanderson.org or hzhao@mdanderson.org