For DNA sequence BLAST search:
-----------------------------
The blastn program is used to search a DNA sequence or multiple DNA
sequences seperated by > on a line by itself (Fasta format) against
DNA database.
The blastx program is used to search a DNA sequence or multiple DNA
sequences seperated by > on a line by itself (Fasta format) against
protein database.
Spaces and newline characters will be removed during
preprocessing.
For Protein sequence BLAST search:
---------------------------------
The tblastn program is used to search a protein sequence or multiple
protein sequences seperated by > on a line by itself (Fasta format)
against a DNA database.
The blastp program is used to search a protein sequence or multiple
protein sequences seperated by > on a line by itself (Fasta format)
against a protein database.
Use single letter code of amino acids as input.
===============================================
Fasta format sequence file is as follows (DNA):
>seq_id1
AAAAAAAAAAAAAAAAAAAAAAAA
GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTTTTTTTTTTTTT
>seq_id2
TTTTTTTTTTTTTTAAAAAAAAAA
CCCCCCCCCCCCCCCCCCCCCCCC
GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
AAAAAAAAAAA
>seq_id3
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
cccccccccccccccccccccccccccccccccc
ggggggggggggggggg
tttt