MDACC
Biostatistics

org.mdanderson.biostat.geneclust
Class GeneClust

java.lang.Object
  extended byorg.mdanderson.biostat.geneclust.GeneClust
All Implemented Interfaces:
GeneClustKeys

public class GeneClust
extends Object
implements GeneClustKeys

A Java application for GeneClust research.


Field Summary
 
Fields inherited from interface org.mdanderson.biostat.geneclust.GeneClustKeys
ABOUT_DIALOG_CONTACT_EMAIL_ADDRESS, ABOUT_DIALOG_CONTACT_EMAIL_ADDRESS_DESCRIPTION, ABOUT_DIALOG_CONTACT_EMAIL_LABEL, ABOUT_DIALOG_CONTACT_PANEL_TITLE, ABOUT_DIALOG_CONTACT_USPS_ADDRESS_CITY_STATE, ABOUT_DIALOG_CONTACT_USPS_ADDRESS_NAME, ABOUT_DIALOG_CONTACT_USPS_ADDRESS_STREET, ABOUT_DIALOG_CONTACT_USPS_LABEL, ABOUT_DIALOG_CONTACT_WEB_ADDRESS, ABOUT_DIALOG_CONTACT_WEB_ADDRESS_DESCRIPTION, ABOUT_DIALOG_CONTACT_WEB_LABEL, ABOUT_DIALOG_CREDITS_COLLABORATOR_LABEL, ABOUT_DIALOG_CREDITS_DEVELOPER_LABEL, ABOUT_DIALOG_CREDITS_RESEARCHER_LABEL, ABOUT_DIALOG_TITLE, ABOUT_MENUITEM_DESCRIPTION, ABOUT_MENUITEM_LABEL, ABOUT_MENUITEM_MNEMONIC, ABOUT_MENUITEM_TOOLTIP, AMPLITUDE_LABEL, AMPLITUDE_TEXTFIELD_COLUMNS, AMPLITUDE_TEXTFIELD_DEFAULT_VALUE, AMPLITUDE_TEXTFIELD_DESCRIPTION, AMPLITUDE_TEXTFIELD_MAXIMUM_VALUE, AMPLITUDE_TEXTFIELD_MINIMUM_VALUE, AMPLITUDE_TEXTFIELD_TOOLTIP, APPLICATION_COPYRIGHT, APPLICATION_DESCRIPTION, APPLICATION_LEGALITIES, APPLICATION_NAME, APPLICATION_RELEASE_DATE, APPLICATION_USAGE, APPLICATION_VERSION, APPLICATION_WINDOW_TITLE, CHOOSE_CLASSIFICATION_FILE_SELECTION_DIALOG_TITLE, CHOOSE_DATA_FILE_SELECTION_DIALOG_TITLE, CHOOSE_FILE_SELECTION_DIALOG_OK_BUTTON_LABEL, CHOOSE_FILE_SELECTION_DIALOG_OK_BUTTON_TOOLTIP, CLASSIFICATION_FILENAME_CHOOSER_BUTTON_DESCRIPTION, CLASSIFICATION_FILENAME_CHOOSER_BUTTON_LABEL, CLASSIFICATION_FILENAME_CHOOSER_BUTTON_TOOLTIP, CLASSIFICATION_FILENAME_LABEL, CLASSIFICATION_FILENAME_TEXTFIELD_COLUMNS, CLASSIFICATION_FILENAME_TEXTFIELD_DEFAULT_VALUE, CLASSIFICATION_FILENAME_TEXTFIELD_DESCRIPTION, CLASSIFICATION_FILENAME_TEXTFIELD_TOOLTIP, DEGREES_FREEDOM_LABEL, DEGREES_FREEDOM_TEXTFIELD_COLUMNS, DEGREES_FREEDOM_TEXTFIELD_DEFAULT_VALUE, DEGREES_FREEDOM_TEXTFIELD_DESCRIPTION, DEGREES_FREEDOM_TEXTFIELD_MAXIMUM_VALUE, DEGREES_FREEDOM_TEXTFIELD_MINIMUM_VALUE, DEGREES_FREEDOM_TEXTFIELD_TOOLTIP, DEMO_DATA_TAB_TITLE, DISPLAY_BUTTON_DESCRIPTION, DISPLAY_BUTTON_LABEL, DISPLAY_BUTTON_TOOLTIP, DISPLAY_DATA_MATRIX_CHECKBOX_DEFAULT_VALUE, DISPLAY_DATA_MATRIX_CHECKBOX_DESCRIPTION, DISPLAY_DATA_MATRIX_CHECKBOX_LABEL, DISPLAY_DATA_MATRIX_CHECKBOX_TOOLTIP, DISPLAY_GENES_GRAPH_CHECKBOX_DEFAULT_VALUE, DISPLAY_GENES_GRAPH_CHECKBOX_DESCRIPTION, DISPLAY_GENES_GRAPH_CHECKBOX_LABEL, DISPLAY_GENES_GRAPH_CHECKBOX_TOOLTIP, DISPLAY_PANEL_TITLE, DISPLAY_SAMPLES_GRAPH_CHECKBOX_DEFAULT_VALUE, DISPLAY_SAMPLES_GRAPH_CHECKBOX_DESCRIPTION, DISPLAY_SAMPLES_GRAPH_CHECKBOX_LABEL, DISPLAY_SAMPLES_GRAPH_CHECKBOX_TOOLTIP, DISPLAY_SHAVING_CLUSTERS_CHECKBOX_DEFAULT_VALUE, DISPLAY_SHAVING_CLUSTERS_CHECKBOX_DESCRIPTION, DISPLAY_SHAVING_CLUSTERS_CHECKBOX_LABEL, DISPLAY_SHAVING_CLUSTERS_CHECKBOX_TOOLTIP, ENABLE_DEMO_CHECKBOX_DESCRIPTION, ENABLE_DEMO_CHECKBOX_TOOLTIP, ENABLE_DEMO_LABEL, ERR_EXTRACT_CLUSTERS_TOO_BIG, ERR_FILE_VERSION_MISMATCH, ERR_JVM_PREREQUISITE, ERR_LOAD_FILE, ERR_NO_PROPERTY_ITEMS_FOUND, ERR_SIMULATION_FAILED, ERROR_DIALOG_TITLE, EXIT_MENUITEM_DESCRIPTION, EXIT_MENUITEM_LABEL, EXIT_MENUITEM_MNEMONIC, EXIT_MENUITEM_TOOLTIP, FILE_MENU_DESCRIPTION, FILE_MENU_LABEL, GAP_TOLERANCE_LABEL, GAP_TOLERANCE_TEXTFIELD_COLUMNS, GAP_TOLERANCE_TEXTFIELD_DEFAULT_VALUE, GAP_TOLERANCE_TEXTFIELD_DESCRIPTION, GAP_TOLERANCE_TEXTFIELD_MAXIMUM_VALUE, GAP_TOLERANCE_TEXTFIELD_MINIMUM_VALUE, GAP_TOLERANCE_TEXTFIELD_TOOLTIP, HELP_MENU_DESCRIPTION, HELP_MENU_LABEL, INFO_LOAD_FILE, INFO_STARTUP, LOGO_DESCRIPTION, MENUBAR_DESCRIPTION, MODEL_COMBOBOX_DESCRIPTION, MODEL_COMBOBOX_ITEM_LABEL_1, MODEL_COMBOBOX_ITEM_LABEL_10, MODEL_COMBOBOX_ITEM_LABEL_2, MODEL_COMBOBOX_ITEM_LABEL_3, MODEL_COMBOBOX_ITEM_LABEL_4, MODEL_COMBOBOX_ITEM_LABEL_5, MODEL_COMBOBOX_ITEM_LABEL_6, MODEL_COMBOBOX_ITEM_LABEL_7, MODEL_COMBOBOX_ITEM_LABEL_8, MODEL_COMBOBOX_ITEM_LABEL_9, MODEL_COMBOBOX_TOOLTIP, MODEL_LABEL, NO_EXCEPTION_DETAIL_MESSAGE, NOISE_COMBOBOX_DESCRIPTION, NOISE_COMBOBOX_ITEM_LABEL_1, NOISE_COMBOBOX_ITEM_LABEL_2, NOISE_COMBOBOX_ITEM_LABEL_3, NOISE_COMBOBOX_ITEM_LABEL_4, NOISE_COMBOBOX_TOOLTIP, NOISE_LABEL, NUM_CLUSTERS_TO_EXTRACT_LABEL, NUM_CLUSTERS_TO_EXTRACT_TEXTFIELD_COLUMNS, NUM_CLUSTERS_TO_EXTRACT_TEXTFIELD_DEFAULT_VALUE, NUM_CLUSTERS_TO_EXTRACT_TEXTFIELD_DESCRIPTION, NUM_CLUSTERS_TO_EXTRACT_TEXTFIELD_MAXIMUM_VALUE, NUM_CLUSTERS_TO_EXTRACT_TEXTFIELD_MINIMUM_VALUE, NUM_CLUSTERS_TO_EXTRACT_TEXTFIELD_TOOLTIP, NUM_COLUMNS_LABEL, NUM_COLUMNS_TEXTFIELD_COLUMNS, NUM_COLUMNS_TEXTFIELD_DEFAULT_VALUE, NUM_COLUMNS_TEXTFIELD_DESCRIPTION, NUM_COLUMNS_TEXTFIELD_MAXIMUM_VALUE, NUM_COLUMNS_TEXTFIELD_MINIMUM_VALUE, NUM_COLUMNS_TEXTFIELD_TOOLTIP, NUM_PERMUTATIONS_LABEL, NUM_PERMUTATIONS_TEXTFIELD_COLUMNS, NUM_PERMUTATIONS_TEXTFIELD_DEFAULT_VALUE, NUM_PERMUTATIONS_TEXTFIELD_DESCRIPTION, NUM_PERMUTATIONS_TEXTFIELD_MAXIMUM_VALUE, NUM_PERMUTATIONS_TEXTFIELD_MINIMUM_VALUE, NUM_PERMUTATIONS_TEXTFIELD_TOOLTIP, NUM_ROWS_LABEL, NUM_ROWS_TEXTFIELD_COLUMNS, NUM_ROWS_TEXTFIELD_DEFAULT_VALUE, NUM_ROWS_TEXTFIELD_DESCRIPTION, NUM_ROWS_TEXTFIELD_MAXIMUM_VALUE, NUM_ROWS_TEXTFIELD_MINIMUM_VALUE, NUM_ROWS_TEXTFIELD_TOOLTIP, OPEN_MENUITEM_DESCRIPTION, OPEN_MENUITEM_LABEL, OPEN_MENUITEM_MNEMONIC, OPEN_MENUITEM_TOOLTIP, OPEN_SETTINGS_FILE_SELECTION_DIALOG_TITLE, OVERVIEW_DIALOG_MESSAGE, OVERVIEW_DIALOG_TITLE, OVERVIEW_MENUITEM_DESCRIPTION, OVERVIEW_MENUITEM_LABEL, OVERVIEW_MENUITEM_MNEMONIC, OVERVIEW_MENUITEM_TOOLTIP, OVERWRITE_DIALOG_MESSAGE, OVERWRITE_DIALOG_TITLE, PACKAGE_NAME, PERCENT_SUPERVISION_LABEL, PERCENT_SUPERVISION_TEXTFIELD_COLUMNS, PERCENT_SUPERVISION_TEXTFIELD_DEFAULT_VALUE, PERCENT_SUPERVISION_TEXTFIELD_DESCRIPTION, PERCENT_SUPERVISION_TEXTFIELD_MAXIMUM_VALUE, PERCENT_SUPERVISION_TEXTFIELD_MINIMUM_VALUE, PERCENT_SUPERVISION_TEXTFIELD_TOOLTIP, PERCENT_TO_SHAVE_LABEL, PERCENT_TO_SHAVE_TEXTFIELD_COLUMNS, PERCENT_TO_SHAVE_TEXTFIELD_DEFAULT_VALUE, PERCENT_TO_SHAVE_TEXTFIELD_DESCRIPTION, PERCENT_TO_SHAVE_TEXTFIELD_MAXIMUM_VALUE, PERCENT_TO_SHAVE_TEXTFIELD_MINIMUM_VALUE, PERCENT_TO_SHAVE_TEXTFIELD_TOOLTIP, PERFORM_SUPERVISED_CHECKBOX_DEFAULT_VALUE, PERFORM_SUPERVISED_CHECKBOX_DESCRIPTION, PERFORM_SUPERVISED_CHECKBOX_LABEL, PERFORM_SUPERVISED_CHECKBOX_TOOLTIP, RAW_DATA_FILENAME_CHOOSER_BUTTON_DESCRIPTION, RAW_DATA_FILENAME_CHOOSER_BUTTON_LABEL, RAW_DATA_FILENAME_CHOOSER_BUTTON_TOOLTIP, RAW_DATA_FILENAME_LABEL, RAW_DATA_FILENAME_TEXTFIELD_COLUMNS, RAW_DATA_FILENAME_TEXTFIELD_DEFAULT_VALUE, RAW_DATA_FILENAME_TEXTFIELD_DESCRIPTION, RAW_DATA_FILENAME_TEXTFIELD_TOOLTIP, RAW_DATA_TAB_TITLE, SAVE_MENUITEM_DESCRIPTION, SAVE_MENUITEM_LABEL, SAVE_MENUITEM_MNEMONIC, SAVE_MENUITEM_TOOLTIP, SAVE_SETTINGS_FILE_SELECTION_DIALOG_TITLE, SHAVING_PANEL_TITLE, SIMULATION_DIALOG_BUTTON_LABEL, SIMULATION_DIALOG_MESSAGE, SIMULATION_DIALOG_TITLE, USER_GUIDE_DIALOG_TITLE, USER_GUIDE_FILE_URL, USER_GUIDE_HTTP_URL, USER_GUIDE_MENUITEM_DESCRIPTION, USER_GUIDE_MENUITEM_LABEL, USER_GUIDE_MENUITEM_MNEMONIC, USER_GUIDE_MENUITEM_TOOLTIP
 
Constructor Summary
GeneClust()
          Class constructor
 
Method Summary
 void display()
          Displays the user interface
 void displayError(String message)
          Displays error message to user
 GeneClustPanel getUserInterface()
          Returns the user interface panel
static void main(String[] argv)
          Main entry-point for the GeneClust class
static void terminate(int reason)
          Causes termination of the Java Virtual Machine.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GeneClust

public GeneClust()
Class constructor

Method Detail

display

public void display()
Displays the user interface


displayError

public void displayError(String message)
Displays error message to user

Parameters:
message - error message to be displayed

getUserInterface

public GeneClustPanel getUserInterface()
Returns the user interface panel

Returns:
instance of GeneClustPanel object

terminate

public static void terminate(int reason)
Causes termination of the Java Virtual Machine. The argument serves as a determination of what the exit status code should be. This method never returns normally.

Parameters:
reason - if non-zero, abnormal termination is indicated; otherwise, successful termination is indicated.
See Also:
System.exit(int)

main

public static void main(String[] argv)
Main entry-point for the GeneClust class

Parameters:
argv - string array containing command line arguments
See Also:
GeneClust User Guide

MDACC
Biostatistics

Copyright © 2002 M.D. Anderson Cancer Center. All Rights Reserved.