Test data is provided in the package. You can type the following commands in the command line to run FamSeq:

1. extract files from the compressed file:
tar xvf FamSeq1.0.1.tar.gz

2. go to source file directory and compile the source file
cd FamSeq/src/
#CPU version
make

#GPU version If you have CUDA-enabled GPUs in your computer.
make -f makefile.gpu

# if you use MacOS 10.8 with XCode 5, or an error like "unsupported option '-dumpspecs'" occurs when compiling, use the following command to compile
make -f makefile.gpu.clang

3. run the test data
#CPU version
./FamSeq vcf -vcfFile ../TestData/test.vcf -pedFile ../TestData/PDF01.ped -output test.FamSeq.vcf -v

#GPU version
./FamSeqCuda vcf -vcfFile ../TestData/test.vcf -pedFile ../TestData/PDF01.ped -output test.FamSeq.vcf -v