PCAWG datasets has 2,778 samples and across 39 cancer types.

The 'Summary Table' column contains a comprehensive overview for each sample per cancer type, including the total count of SNVs, the number of identified clusters, the quantity of clonal and subclonal SNVs, and the proportion of subclonal SNVs.

The 'Raw results' clumnn contains CliPP result data for all samples in each cancer type. Each sample's folder includes the subclonal structure (clustering results), such as cluster number, total SNVs per cluster, and estimated CP for each cluster, along with mutation assignments (cluster ID for each mutation).

Please refer to our paper for more detailed information about the data.

Cohort	Cancer type	Summary Table	Raw Results
PCAWG
	Bladder Urothelial Carcinoma (BLCA)
	Bone Cancer (BOCA)
	Breast Cancer (BRCA)
	Biliary Tract Cancer (BTCA)
	Cervical Squamous Cell Carcinoma (CESC)
	Chronic Lymphocytic Leukemia (CLLE)
	Chronic Myeloid Disorders (CMDI)
	Colorectal Cancer (CRC)
	Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (DLBC)
	Early Onset Prostate Cancer (EOPC)
	Esophageal Adenocarcinoma (ESAD)
	Gastric Cancer (GACA)
	Glioblastoma Multiforme (GBM)
	Head and Neck Squamous Cell Carcinoma (HNSC)
	Kidney Chromophobe (KICH)
	Kidney Renal Clear Cell Carcinoma (KIRC)
	Kidney Renal Papillary Cell Carcinoma (KIRP)
	Acute Myeloid Leukemia (LAML)
	Brain Lower Grade Glioma (LGG)
	Liver Cancer (LICA)
	Liver Hepatocellular carcinoma (LIHC)
	Liver Cancer (LINC)
	Liver Cancer (LIRI)
	Lung Adenocarcinoma (LUAD)
	Lung Squamous Cell Carcinoma (LUSC)
	Malignant Lymphoma (MALY)
	Skin Cancer (MELA)
	Oral Cancer (ORCA)
	Ovarian Cancer (OV)
	Pancreatic Cancer (PACA)
	Pancreatic Endocrine Neoplasms (PAEN)
	Pediatric Brain Cancer (PBCA)
	Prostate Adenocarcinoma (PRAD)
	Rectum Adenocarcinoma (RECA)
	Sarcoma (SARC)
	Skin Cutaneous Melanom (SKCM)
	Gastric Adenocarcinoma (STAD)
	Thyroid Cancer (THCA)
	Uterine Corpus Endometrial Carcinoma (UCEC)