data.RmdTCGA datasets has 7,708 sample and across 32 cancer types.
In the 'Summary Table' column, you'll find text files for each cancer type. These files provide a comprehensive overview for each sample, including the total count of SNVs, the number of identified clusters, the quantity of clonal and subclonal SNVs, and the proportion of subclonal SNVs.
Please refer to our paper for more detailed information about the data.
| Cohort | Cancer type | Summary Table | |
|---|---|---|---|
| TCGA | Adrenocortical Carcinoma (ACC) | Download | |
| Bladder Urothelial Carcinoma (BLCA) | Download | ||
| Breast Invasive Carcinoma (BRCA) | Download | ||
| Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) | Download | ||
| Cholangiocarcinoma (CHOL) | Download | ||
| Colorectal Cancer (CRC) | Download | ||
| Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (DLBC) | Download | ||
| Esophageal Carcinoma (ESCA) | Download | ||
| Glioblastoma Multiforme (GBM) | Download | ||
| Head and Neck Squamous Cell Carcinoma (HNSC) | Download | ||
| Kidney Chromophobe (KICH) | Download | ||
| Kidney Renal Clear Cell Carcinoma (KIRC) | Download | ||
| Kidney Renal Papillary Cell Carcinoma (KIRP) | Download | ||
| Acute Myeloid Leukemia (LAML) | Download | ||
| Brain Lower Grade Glioma (LGG) | Download | ||
| Liver Hepatocellular Carcinoma (LIHC) | Download | ||
| Lung Adenocarcinoma (LUAD) | Download | ||
| Lung Squamous Cell Carcinoma (LUSC) | Download | ||
| Mesothelioma (MESO) | Download | ||
| Ovarian Serous Cystadenocarcinoma (OV) | Download | ||
| Pancreatic Adenocarcinoma (PAAD) | Download | ||
| Pheochromocytoma and Paraganglioma (PCPG) | Download | ||
| Prostate Adenocarcinoma (PRAD) | Download | ||
| Sarcoma (SARC) | Download | ||
| Skin Cutaneous Melanoma (SKCM) | Download | ||
| Stomach Adenocarcinoma (STAD) | Download | ||
| Testicular Germ Cell Tumors (TGCT) | Download | ||
| Thyroid Carcinoma (THCA) | Download | ||
| Thymoma (THYM) | Download | ||
| Uterine Corpus Endometrial Carcinoma (UCEC) | Download | ||
| Uterine Carcinosarcoma (UCS) | Download | ||
| Uveal Melanoma (UVM) | Download |