Software


CLiP/CSR


Clonal structure identification through penalizing pairwise differences. Consensus Clustering for Subclonal structure Reconstruction.

DeMixT


Software package that performs deconvolution on transcriptome data from a mixture of two or three components




Famdenovo


Famdenovo is an algorithm that calculates the probability of a germline mutation to be de novo based on family history data

FamSeq


A C++ based software for variant calling in data generated from family-based sequencing studies




LFSPRO


Personalized risk assessment for families with Li-Fraumeni Syndrome (R package)

MuSE


Mutation somatic evolution estimation for mutation calling in sequencing data of tumor-normal pair samples (C++)




SRMA


Sequence Robust Multi-array Analysis for resequencing arrays (R package)

BayesMendel


A comprehensive environment for prediction of inherited cancer susceptibility (R package)